I had lot of flv video files and wanted to convert it to mp4 for my itouch. Here is the quick way. -f is to force the format to mp4.
$ ffmpeg -i file.flv -f mp4 file.mp4
If you have to convert all files in a folder. Here is the small script. It will convert all flv files to mp4 with the same name with extenstion to mp4.
for file in *.flv
do
ffmpeg -i "$file" -f mp4 "${file%.flv}.mp4
done
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